PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC3853_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 583aa    MW: 65450.7 Da    PI: 6.5576
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC3853_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP98.94.4e-31100168277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv gC++dls  k+yh+rh+vCe+hsk++vv+vsg+eqr       fh lsefD++krsCrrrLa+hnerrrk++
  RrC3853_p1 100 CQVYGCNMDLSFSKDYHKRHRVCEAHSKTSVVIVSGTEQR-------FHFLSEFDDGKRSCRRRLAGHNERRRKPS 168
                 **************************************97.......7**************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.8E-2394154IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.13697167IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3098170IPR004333Transcription factor, SBP-box
PfamPF031102.6E-21100166IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MDSWSYGRSV FLANGSDSFT ENQRFMPGFE QGLSPELETS NGFITKVASS SSCVVEENQS  60
SNLSRIDFKL RSFMDYGNQS SLPAKKTRAA SNSCSQSPLC QVYGCNMDLS FSKDYHKRHR  120
VCEAHSKTSV VIVSGTEQRF HFLSEFDDGK RSCRRRLAGH NERRRKPSFY FLPGKRHKLL  180
PQESFPGSFL YRVVDEHDHH RPSRLVSFKD EPKQESGVSY IWDLQEAVPP PPRSTCALSL  240
LSAQSQPETN PNKSFSITQP NQSFNHSTVD YYHQMQPLRI DPGKKTKSVT SSSSCNGNGS  300
STVDLVQLSS HLQRIQQQQR TFTDECYFAQ GAKAAWFGLI SLWYWFGDYW IVPFSVMPSL  360
VKLSSLLELR LLHRISLSSS SSSTIEIYLT IGRCGYKCRR GDGGCRDSGC YGSECGYRDG  420
RCEKEVVVVD TLVVDIVAVD VNMEMEAVRK TKCFSSLLDL RLLRRISLSS SSSSTIGESH  480
HESRNSNPFS IFQDLMLKMN DVGSCGGEAV DTLMDAVVED VRVKTVVEMV MDDVVDAVMV  540
DTMMVDVDTN VEDEEVVVDA LVVDDVAVDV NMKMEAVRKS KWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-21991661084squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8159531e-46KC815953.1 Arabis alpina SQUAMOSA promoter binding protein-like protein 6 (SPL6) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013618177.11e-164PREDICTED: squamosa promoter-binding-like protein 6 isoform X2
SwissprotQ94JW81e-121SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBLA0A078CWR91e-164A0A078CWR9_BRANA; BnaC02g19100D protein
STRINGBra038324.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92752435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.11e-111SBP family protein